Cell information vs assay expression on spatial coordinates

In this tab, users can visualise both cell information and gene expression side-by-side on spatial plot.

Zoom-enable reduced dimensions overlaid with cell info or assay expression

In this tab, users can visualise either cell information and gene expression in a zoom-enabled low-dimensional representions plots.

Cell information vs assay expression on reduced dimensions

In this tab, users can visualise both cell information and gene expression side-by-side on low-dimensional representions.

Relationship between left-side and right-side cell info / feature

Coexpression of two genes on reduced dimensions

In this tab, users can visualise the coexpression of two genes on low-dimensional representions.

Cell information / assay expression violin plot / box plot

In this tab, users can visualise the assay expression or continuous cell information (e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).

Proportion / cell numbers across different cell information

In this tab, users can visualise the composition of single cells based on one discrete cell information across another discrete cell information. Usage examples include the library or cellcycle composition across clusters.

Gene expression bubbleplot / heatmap

In this tab, users can visualise the gene expression patterns of multiple genes grouped by categorical cell information (e.g. library / cluster).
The normalised expression are averaged, log-transformed and then plotted.

Track plot

In this tab, users can visualise open chromatin regions.

Zoom-enable reduced dimensions overlaid with cell info or assay expression

In this tab, users can visualise either cell information and gene expression in a zoom-enabled low-dimensional representions plots.

Cell information vs assay expression on reduced dimensions

In this tab, users can visualise both cell information and gene expression side-by-side on low-dimensional representions.

Relationship between left-side and right-side cell info / feature

Coexpression of two genes on reduced dimensions

In this tab, users can visualise the coexpression of two genes on low-dimensional representions.

Cell information / assay expression violin plot / box plot

In this tab, users can visualise the assay expression or continuous cell information (e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).

Proportion / cell numbers across different cell information

In this tab, users can visualise the composition of single cells based on one discrete cell information across another discrete cell information. Usage examples include the library or cellcycle composition across clusters.

Gene expression bubbleplot / heatmap

In this tab, users can visualise the gene expression patterns of multiple genes grouped by categorical cell information (e.g. library / cluster).
The normalised expression are averaged, log-transformed and then plotted.

Zoom-enable reduced dimensions overlaid with cell info or assay expression

In this tab, users can visualise either cell information and gene expression in a zoom-enabled low-dimensional representions plots.

Cell information vs assay expression on reduced dimensions

In this tab, users can visualise both cell information and gene expression side-by-side on low-dimensional representions.

Relationship between left-side and right-side cell info / feature

Coexpression of two genes on reduced dimensions

In this tab, users can visualise the coexpression of two genes on low-dimensional representions.

Cell information / assay expression violin plot / box plot

In this tab, users can visualise the assay expression or continuous cell information (e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).

Proportion / cell numbers across different cell information

In this tab, users can visualise the composition of single cells based on one discrete cell information across another discrete cell information. Usage examples include the library or cellcycle composition across clusters.

Gene expression bubbleplot / heatmap

In this tab, users can visualise the gene expression patterns of multiple genes grouped by categorical cell information (e.g. library / cluster).
The normalised expression are averaged, log-transformed and then plotted.